Cgr1, a ripe rot resistance QTL in Vitis amurensis 'Shuang Hong' grapevine.
Identifieur interne : 000210 ( Main/Exploration ); précédent : 000209; suivant : 000211Cgr1, a ripe rot resistance QTL in Vitis amurensis 'Shuang Hong' grapevine.
Auteurs : Peining Fu [République populaire de Chine] ; Quanyou Tian [République populaire de Chine] ; Gongti Lai [République populaire de Chine] ; Rongfang Li [République populaire de Chine] ; Shiren Song [République populaire de Chine] ; Jiang Lu [République populaire de Chine]Source :
- Horticulture research [ 2052-7276 ] ; 2019.
Abstract
Ripe rot is a serious grapevine disease in Vitis L. and Muscadinia (Planch.) Small. However, resistance to this disease has been reported in some oriental Vitis species. To identify resistance-related Quantitative Trait Loci (QTLs) from the Chinese grape species V. amurensis, an F1 population of V. vinifera 'Cabernet Sauvignon' × V. amurensis 'Shuang Hong' was used to map the ripe rot resistance loci expected in 'Shuang Hong' grape. A total of 7598 single nucleotide polymorphisms (SNPs) between the parents were identified in our previous study, and 934 SNPs were selected for genetic map construction. These SNPs are distributed across the 19 chromosomes covering a total of 1665.31 cM in length, with an average of 1.81 cM between markers. Ripe rot resistance phenotypes among the hybrids were evaluated in vitro using excised leaves for three consecutive years from 2016 to 2018; a continuous variation was found among the F1 hybrids, and the Pearson correlation coefficients of the phenotypes scored in all three years were significant at the 0.01 level. Notably, the first QTL reported for resistance to grape ripe rot disease, named Cgr1, was identified on chromosome 14 of 'Shuang Hong' grapevine. Cgr1 could explain up to 19.90% of the phenotypic variance. In addition, a SNP named 'np19345' was identified as a molecular marker closely linked to the peak of Cgr1 and has the potential to be developed as a marker for the Cgr1 resistance haplotype.
DOI: 10.1038/s41438-019-0148-0
PubMed: 31231525
PubMed Central: PMC6544659
Affiliations:
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Agricultural University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Tian, Quanyou" sort="Tian, Quanyou" uniqKey="Tian Q" first="Quanyou" last="Tian">Quanyou Tian</name><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Lai, Gongti" sort="Lai, Gongti" uniqKey="Lai G" first="Gongti" last="Lai">Gongti Lai</name><affiliation wicri:level="3"><nlm:affiliation>1Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Li, Rongfang" sort="Li, Rongfang" uniqKey="Li R" first="Rongfang" last="Li">Rongfang Li</name><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Song, Shiren" sort="Song, Shiren" uniqKey="Song S" first="Shiren" last="Song">Shiren Song</name><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><affiliation wicri:level="1"><nlm:affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author></analytic><series><title level="j">Horticulture research</title><idno type="ISSN">2052-7276</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Ripe rot is a serious grapevine disease in <i>Vitis</i> L. and <i>Muscadinia</i> (Planch.) Small. However, resistance to this disease has been reported in some oriental <i>Vitis</i> species. To identify resistance-related Quantitative Trait Loci (QTLs) from the Chinese grape species <i>V. amurensis</i>, an F<sub>1</sub> population of <i>V. vinifera</i> 'Cabernet Sauvignon' × <i>V. amurensis</i> 'Shuang Hong' was used to map the ripe rot resistance loci expected in 'Shuang Hong' grape. A total of 7598 single nucleotide polymorphisms (SNPs) between the parents were identified in our previous study, and 934 SNPs were selected for genetic map construction. These SNPs are distributed across the 19 chromosomes covering a total of 1665.31 cM in length, with an average of 1.81 cM between markers. Ripe rot resistance phenotypes among the hybrids were evaluated in vitro using excised leaves for three consecutive years from 2016 to 2018; a continuous variation was found among the F<sub>1</sub> hybrids, and the Pearson correlation coefficients of the phenotypes scored in all three years were significant at the 0.01 level. Notably, the first QTL reported for resistance to grape ripe rot disease, named <i>Cgr1</i>, was identified on chromosome 14 of 'Shuang Hong' grapevine. <i>Cgr1</i> could explain up to 19.90% of the phenotypic variance. In addition, a SNP named 'np19345' was identified as a molecular marker closely linked to the peak of <i>Cgr1</i> and has the potential to be developed as a marker for the <i>Cgr1</i> resistance haplotype.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31231525</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2052-7276</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>Horticulture research</Title><ISOAbbreviation>Hortic Res</ISOAbbreviation></Journal><ArticleTitle><i>Cgr1</i>, a ripe rot resistance QTL in <i>Vitis amurensis</i> 'Shuang Hong' grapevine.</ArticleTitle><Pagination><MedlinePgn>67</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41438-019-0148-0</ELocationID><Abstract><AbstractText>Ripe rot is a serious grapevine disease in <i>Vitis</i> L. and <i>Muscadinia</i> (Planch.) Small. However, resistance to this disease has been reported in some oriental <i>Vitis</i> species. To identify resistance-related Quantitative Trait Loci (QTLs) from the Chinese grape species <i>V. amurensis</i>, an F<sub>1</sub> population of <i>V. vinifera</i> 'Cabernet Sauvignon' × <i>V. amurensis</i> 'Shuang Hong' was used to map the ripe rot resistance loci expected in 'Shuang Hong' grape. A total of 7598 single nucleotide polymorphisms (SNPs) between the parents were identified in our previous study, and 934 SNPs were selected for genetic map construction. These SNPs are distributed across the 19 chromosomes covering a total of 1665.31 cM in length, with an average of 1.81 cM between markers. Ripe rot resistance phenotypes among the hybrids were evaluated in vitro using excised leaves for three consecutive years from 2016 to 2018; a continuous variation was found among the F<sub>1</sub> hybrids, and the Pearson correlation coefficients of the phenotypes scored in all three years were significant at the 0.01 level. Notably, the first QTL reported for resistance to grape ripe rot disease, named <i>Cgr1</i>, was identified on chromosome 14 of 'Shuang Hong' grapevine. <i>Cgr1</i> could explain up to 19.90% of the phenotypic variance. In addition, a SNP named 'np19345' was identified as a molecular marker closely linked to the peak of <i>Cgr1</i> and has the potential to be developed as a marker for the <i>Cgr1</i> resistance haplotype.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Peining</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>1Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 China.</Affiliation><Identifier Source="ISNI">0000 0004 0530 8290</Identifier><Identifier Source="GRID">grid.22935.3f</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tian</LastName><ForeName>Quanyou</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lai</LastName><ForeName>Gongti</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>1Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 China.</Affiliation><Identifier Source="ISNI">0000 0004 0530 8290</Identifier><Identifier Source="GRID">grid.22935.3f</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Rongfang</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Shiren</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Jiang</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0001-6819-5607</Identifier><AffiliationInfo><Affiliation>2Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240 China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 8293</Identifier><Identifier Source="GRID">grid.16821.3c</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>06</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Hortic Res</MedlineTA><NlmUniqueID>101655540</NlmUniqueID><ISSNLinking>2052-7276</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Agricultural genetics</Keyword><Keyword MajorTopicYN="N">Plant hybridization</Keyword></KeywordList><CoiStatement>Conflict of interestThe authors declare that they have no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>12</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>03</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>03</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31231525</ArticleId><ArticleId 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IdType="pubmed">7672609</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Fu, Peining" sort="Fu, Peining" uniqKey="Fu P" first="Peining" last="Fu">Peining Fu</name></noRegion><name sortKey="Fu, Peining" sort="Fu, Peining" uniqKey="Fu P" first="Peining" last="Fu">Peining Fu</name><name sortKey="Lai, Gongti" sort="Lai, Gongti" uniqKey="Lai G" first="Gongti" last="Lai">Gongti Lai</name><name sortKey="Lai, Gongti" sort="Lai, Gongti" uniqKey="Lai G" first="Gongti" last="Lai">Gongti Lai</name><name sortKey="Li, Rongfang" sort="Li, Rongfang" uniqKey="Li R" first="Rongfang" last="Li">Rongfang Li</name><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><name sortKey="Song, Shiren" sort="Song, Shiren" uniqKey="Song S" first="Shiren" last="Song">Shiren Song</name><name sortKey="Tian, Quanyou" sort="Tian, Quanyou" uniqKey="Tian Q" first="Quanyou" last="Tian">Quanyou Tian</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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